PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.103760.4
Common NameCsa_6G497260, LOC101205974
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 336aa    MW: 37498.9 Da    PI: 4.4719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.103760.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11172215654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  Cucsa.103760.4 172 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYVKEL 215
                     589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-15169228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9172215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14173227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.34E-5173219No hitNo description
CDDcd048730.00295261302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MELSQHGFLE ELLASTPWTS SYSNGFNDFF QNGWNFTSFD ENPQMASSTF SNFPTIQTPN  60
DFSFADQQLY SNFLEGFAMP ELDSSSYTKN NETPPFVSQE EMSNKNNGYP PVAMEEEELG  120
FIETETAPSV CKVEMEQMGV REINGSIMGV AELGKRSSNK AKKIEGQPSK NLMAERRRRK  180
RLNDRLSMLR AIVPKISKMD RTSILGDTID YVKELLERIN NLKEEEETGL DSNHVGFFNG  240
ISKEGKSNEV QFDVERKEKE TRIDICCATR PGLLLSTVNT LEALGLEIQQ CVISCFNDFS  300
MQASCAEGSA QKAVASSDDI KEALFRNAGY GGKCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143539.20.0PREDICTED: transcription factor bHLH93 isoform X2
SwissprotQ9LSL12e-76BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0A0KG390.0A0A0A0KG39_CUCSA; Uncharacterized protein
STRINGVIT_00s1312g00010.t011e-109(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-77beta HLH protein 93
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]